Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 57822
Gene Symbol: GRHL3
GRHL3
0.040 GeneticVariation disease BEFREE The GRHL3 C67G missense variant may increase the risk for spina bifida and encephalocele phenotypes. 31332962 2019
Entrez Id: 5754
Gene Symbol: PTK7
PTK7
0.030 GeneticVariation disease BEFREE We identified three rare (MAF <0.001) missense heterozygous PTK7 variants (NM_001270398.1:c.581C>T, p.Arg630Ser and p.Tyr725Phe) in the spina bifida patients. 30689296 2019
Entrez Id: 7077
Gene Symbol: TIMP2
TIMP2
0.020 GeneticVariation disease BEFREE The aim of this study was to investigate the disease-specific urinary levels variations of neurotrophins (NGF, BDNF), mediators of inflammation (TGFβ-1, PGE-2) and markers of extracellular matrix alterations (TIMP-2) in patients with multiple sclerosis (MS) spinal cord injury (SCI), or spina bifida (SB), and neurogenic detrusor overactivity (NDO). 31741027 2019
Entrez Id: 7077
Gene Symbol: TIMP2
TIMP2
0.020 Biomarker disease BEFREE Urinary TIMP-2 and MMP-2 are significantly associated with poor bladder compliance in adult patients with spina bifida. 31486131 2019
Entrez Id: 7040
Gene Symbol: TGFB1
TGFB1
0.010 AlteredExpression disease BEFREE SCI patients had a significantly lower level of TGFβ-1 than SB patients (p = 0.04). 31741027 2019
Entrez Id: 627
Gene Symbol: BDNF
BDNF
0.010 Biomarker disease BEFREE The aim of this study was to investigate the disease-specific urinary levels variations of neurotrophins (NGF, BDNF), mediators of inflammation (TGFβ-1, PGE-2) and markers of extracellular matrix alterations (TIMP-2) in patients with multiple sclerosis (MS) spinal cord injury (SCI), or spina bifida (SB), and neurogenic detrusor overactivity (NDO). 31741027 2019
Entrez Id: 1437
Gene Symbol: CSF2
CSF2
0.010 Biomarker disease BEFREE Sacral laminoplasty with titanium mesh is a safe and effective procedure for treating progressive sacral dural ectasia and refractory pseudomeningocele, preventing CSF leakage as well as relieving local symptoms that may occur years after previous surgery for spina bifida. 31574475 2019
Entrez Id: 3918
Gene Symbol: LAMC2
LAMC2
0.010 Biomarker disease BEFREE Sacral laminoplasty with titanium mesh is a safe and effective procedure for treating progressive sacral dural ectasia and refractory pseudomeningocele, preventing CSF leakage as well as relieving local symptoms that may occur years after previous surgery for spina bifida. 31574475 2019
Entrez Id: 2191
Gene Symbol: FAP
FAP
0.010 GeneticVariation disease BEFREE We used the combined prevalence of spina bifida and anencephaly in selected countries before fortification, and estimated preventable child mortality associated with FAP SBA, assuming 0.5 per 1,000 live births as minimum achievable prevalence from mandatory fortification. 30070775 2019
Entrez Id: 4803
Gene Symbol: NGF
NGF
0.010 AlteredExpression disease BEFREE The aim of this study was to investigate the disease-specific urinary levels variations of neurotrophins (NGF, BDNF), mediators of inflammation (TGFβ-1, PGE-2) and markers of extracellular matrix alterations (TIMP-2) in patients with multiple sclerosis (MS) spinal cord injury (SCI), or spina bifida (SB), and neurogenic detrusor overactivity (NDO). 31741027 2019
Entrez Id: 9033
Gene Symbol: PKD2L1
PKD2L1
0.010 Biomarker disease BEFREE In Vivo Evaluation of Novel PLA/PCL Polymeric Patch in Rats for Potential Spina Bifida Coverage. 31071606 2019
Entrez Id: 4313
Gene Symbol: MMP2
MMP2
0.010 Biomarker disease BEFREE Urinary TIMP-2 and MMP-2 are significantly associated with poor bladder compliance in adult patients with spina bifida. 31486131 2019
Entrez Id: 952
Gene Symbol: CD38
CD38
0.010 Biomarker disease BEFREE We hypothesize that thoracic epidural placement in the T9 to T10 interspace is safe and decreases narcotic requirements following major open lower urinary tract reconstruction in patients with low level spina bifida. 30577407 2019
Entrez Id: 2324
Gene Symbol: FLT4
FLT4
0.010 Biomarker disease BEFREE In Vivo Evaluation of Novel PLA/PCL Polymeric Patch in Rats for Potential Spina Bifida Coverage. 31071606 2019
Entrez Id: 23432
Gene Symbol: GPR161
GPR161
0.010 GeneticVariation disease BEFREE Our results demonstrate that GPR161 mutations cause NTDs via dysregulation of Shh and Wnt signaling in mice, and novel rare variants of GPR161 can be risk factors for SB in humans. 30256984 2019
Entrez Id: 63926
Gene Symbol: ANKEF1
ANKEF1
0.010 Biomarker disease BEFREE That study also revealed a critical role for ankef1 in the embryonic development of the frog, with morphants exhibiting phenotypes including spina bifida and a shortened body axis. 31520739 2019
Entrez Id: 6497
Gene Symbol: SKI
SKI
0.010 GeneticVariation disease BEFREE A de novo mutation in DHD domain of SKI causing spina bifida with no craniofacial malformation or intellectual disability. 30883014 2019
Entrez Id: 57216
Gene Symbol: VANGL2
VANGL2
0.330 Biomarker disease BEFREE Vangl2 disruption alters the biomechanics of late spinal neurulation leading to spina bifida in mouse embryos. 29590636 2018
Entrez Id: 57216
Gene Symbol: VANGL2
VANGL2
0.330 GeneticVariation disease BEFREE Overexpression of Grainyhead-like 3 causes spina bifida and interacts genetically with mutant alleles of Grhl2 and Vangl2 in mice. 30189017 2018
Entrez Id: 57822
Gene Symbol: GRHL3
GRHL3
0.040 AlteredExpression disease BEFREE Notably, however, further increase in expression of Grhl3 causes highly penetrant SB. 30189017 2018
Entrez Id: 57822
Gene Symbol: GRHL3
GRHL3
0.040 Biomarker disease BEFREE Among the genes whose loss of function causes NTDs in mice, Grainyhead-like3 (Grhl3) is essential for spinal neural tube closure, with null mutants exhibiting fully penetrant spina bifida. 29397878 2018
Entrez Id: 7546
Gene Symbol: ZIC2
ZIC2
0.040 GeneticVariation disease BEFREE Spina bifida-predisposing heterozygous mutations in Planar Cell Polarity genes and Zic2 reduce bone mass in young mice. 29463853 2018
Entrez Id: 5754
Gene Symbol: PTK7
PTK7
0.030 GeneticVariation disease BEFREE Of the six NTD cases, three spina bifida cases and one anencephaly case carried digenic variants in the CELSR1 and SCRIB gene; one anencephaly case carried variants in the CELSR1 and DVL3 gene; and one spina bifida case carried variants in the PTK7 and SCRIB genes. 29573971 2018
Entrez Id: 9620
Gene Symbol: CELSR1
CELSR1
0.030 GeneticVariation disease BEFREE Of the six NTD cases, three spina bifida cases and one anencephaly case carried digenic variants in the CELSR1 and SCRIB gene; one anencephaly case carried variants in the CELSR1 and DVL3 gene; and one spina bifida case carried variants in the PTK7 and SCRIB genes. 29573971 2018
Entrez Id: 23513
Gene Symbol: SCRIB
SCRIB
0.020 GeneticVariation disease BEFREE Of the six NTD cases, three spina bifida cases and one anencephaly case carried digenic variants in the CELSR1 and SCRIB gene; one anencephaly case carried variants in the CELSR1 and DVL3 gene; and one spina bifida case carried variants in the PTK7 and SCRIB genes. 29573971 2018